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LOC115187874 exostosin-1a-like [ Salmo trutta (river trout) ]

Gene ID: 115187874, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115187874
Gene description
exostosin-1a-like
See related
Ensembl:ENSSTUG00000040542
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115187874 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822992.1 (796281..907209, complement)

NW_021822992.1Genomic Context describing neighboring genes Neighboring gene CUB and sushi domain-containing protein 3-like Neighboring gene eukaryotic translation initiation factor 3 subunit H-like Neighboring gene uncharacterized LOC115187889 Neighboring gene double-strand-break repair protein rad21 homolog A-like Neighboring gene WASH complex subunit 5-like Neighboring gene uncharacterized LOC115187886

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021822992 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1a-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NW_021822992.1 Reference fSalTru1.1 Primary Assembly

    Range
    796281..907209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029746911.1 → XP_029602771.1  exostosin-1a-like

    UniProtKB/TrEMBL
    A0A674AIZ4, A0A674D996
    Related
    ENSSTUP00000092273.1, ENSSTUT00000098238.1
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 392
    Exostosin; Exostosin family
    pfam09258
    Location:476 → 721
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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