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LOC115186503 zinc finger protein 135-like [ Salmo trutta (river trout) ]

Gene ID: 115186503, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115186503
Gene description
zinc finger protein 135-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC115186503 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822911.1 (15013033..15014936, complement)

NW_021822911.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 2 homolog Neighboring gene coiled-coil domain-containing protein 97-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene zinc finger protein 271-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021822911 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 135-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NW_021822911.1 Reference fSalTru1.1 Primary Assembly

    Range
    15013033..15014936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029746124.1 → XP_029601984.1  zinc finger protein 135-like

    Conserved Domains (2) summary
    COG5048
    Location:41 → 391
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:314 → 334
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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