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LOC115184256 gastrula zinc finger protein XlCGF48.2-like [ Salmo trutta (river trout) ]

Gene ID: 115184256, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115184256
Gene description
gastrula zinc finger protein XlCGF48.2-like
See related
Ensembl:ENSSTUG00000033224
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115184256 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 3 NC_042959.1 (65931234..65938733)

Chromosome 3 - NC_042959.1Genomic Context describing neighboring genes Neighboring gene vegetative cell wall protein gp1-like Neighboring gene DNA-binding death effector domain-containing protein 2-like Neighboring gene uncharacterized LOC115184322 Neighboring gene zinc finger protein 37-like Neighboring gene uncharacterized LOC115184333

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042959.1 Chromosome 3 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF48.2-like; zinc finger protein 37 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042959.1 Reference fSalTru1.1 Primary Assembly

    Range
    65931234..65938733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029745301.1 → XP_029601161.1  gastrula zinc finger protein XlCGF48.2-like isoform X2

  2. XM_029745294.1 → XP_029601154.1  gastrula zinc finger protein XlCGF48.2-like isoform X1

  3. XM_029745312.1 → XP_029601172.1  zinc finger protein 37 homolog isoform X3

    UniProtKB/TrEMBL
    A0A674BX74
    Related
    ENSSTUP00000075661.1, ENSSTUT00000080426.1
    Conserved Domains (3) summary
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:249 → 297
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13465
    Location:316 → 340
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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