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LOC115183718 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Salmo trutta (river trout) ]

Gene ID: 115183718, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115183718
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
See related
Ensembl:ENSSTUG00000038226
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115183718 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822696.1 (128770..145598)

NW_021822696.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115183713 Neighboring gene uncharacterized LOC115183723 Neighboring gene uncharacterized LOC115183717 Neighboring gene uncharacterized LOC115183720

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021822696 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NW_021822696.1 Reference fSalTru1.1 Primary Assembly

    Range
    128770..145598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029744790.1 → XP_029600650.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A674CTL3
    Conserved Domains (1) summary
    cl11394
    Location:86 → 359
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_029744791.1 → XP_029600651.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A674CTL3, A0A674CTR2
    Related
    ENSSTUP00000086818.1, ENSSTUT00000092422.1
Nucleotide Protein
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