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LOC115183597 gastrula zinc finger protein XlCGF57.1-like [ Salmo trutta (river trout) ]

Gene ID: 115183597, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115183597
Gene description
gastrula zinc finger protein XlCGF57.1-like
See related
Ensembl:ENSSTUG00000031855
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115183597 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 3 NC_042959.1 (64667639..64678637, complement)

Chromosome 3 - NC_042959.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115183530 Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene oocyte zinc finger protein XlCOF26-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042959.1 Chromosome 3 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like; zinc finger MYM-type protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042959.1 Reference fSalTru1.1 Primary Assembly

    Range
    64667639..64678637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029744747.1 → XP_029600607.1  zinc finger MYM-type protein 1-like isoform X2

    Conserved Domains (2) summary
    pfam05699
    Location:467 → 519
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam14291
    Location:2 → 157
    DUF4371; Domain of unknown function (DUF4371)

  2. XM_029744748.1 → XP_029600608.1  zinc finger MYM-type protein 1-like isoform X2

    Conserved Domains (2) summary
    pfam05699
    Location:467 → 519
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam14291
    Location:2 → 157
    DUF4371; Domain of unknown function (DUF4371)

  3. XM_029744745.1 → XP_029600605.1  gastrula zinc finger protein XlCGF57.1-like isoform X1

    UniProtKB/TrEMBL
    A0A674BP46
    Conserved Domains (4) summary
    COG5048
    Location:465 → 548
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:581 → 598
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:313 → 337
    zf-H2C2_2; Zinc-finger double domain

  4. XM_029744744.1 → XP_029600604.1  gastrula zinc finger protein XlCGF57.1-like isoform X1

    UniProtKB/TrEMBL
    A0A674BP46
    Related
    ENSSTUP00000072852.1, ENSSTUT00000077324.1
    Conserved Domains (4) summary
    COG5048
    Location:465 → 548
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:581 → 598
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:313 → 337
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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