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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Salmo trutta (river trout) ]

Gene ID: 115182957, updated on 17-Mar-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
See related
Ensembl:ENSSTUG00000009246
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 3 NC_042959.1 (62742909..62797387)

Chromosome 3 - NC_042959.1Genomic Context describing neighboring genes Neighboring gene intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene suppressor of tumorigenicity 14 protein homolog Neighboring gene amyloid-like protein 1 Neighboring gene uncharacterized LOC115164614

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042959.1 Chromosome 3 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1; kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042959.1 Reference fSalTru1.1 Primary Assembly

    Range
    62742909..62797387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029744316.1 → XP_029600176.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A673Z6C7

  2. XM_029744359.1 → XP_029600219.1  kin of IRRE-like protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A673Z6C7

  3. XM_029744323.1 → XP_029600183.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A673Z6C7

  4. XM_029744349.1 → XP_029600209.1  kin of IRRE-like protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A673Z6C7
    Conserved Domains (3) summary
    cd05759
    Location:136 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05758
    Location:394 → 491
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    cl11960
    Location:308 → 392
    Ig; Immunoglobulin domain

  5. XM_029744370.1 → XP_029600230.1  kin of IRRE-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A673Z6C7

  6. XM_029744331.1 → XP_029600191.1  kin of IRRE-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A673Z6C7

  7. XM_029744324.1 → XP_029600184.1  kin of IRRE-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A673Z6C7

  8. XM_029744322.1 → XP_029600182.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A673Z6C7
    Conserved Domains (4) summary
    cd05759
    Location:136 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05758
    Location:391 → 488
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:305 → 389
    Ig; Immunoglobulin domain

  9. XM_029744338.1 → XP_029600198.1  kin of IRRE-like protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A673Z6C7
    Conserved Domains (4) summary
    cd05759
    Location:136 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05758
    Location:388 → 485
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain

  10. XM_029744377.1 → XP_029600237.1  kin of IRRE-like protein 3 isoform X10

    UniProtKB/TrEMBL
    A0A673Z6C7
    Conserved Domains (3) summary
    cd05759
    Location:136 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05758
    Location:394 → 491
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    cl11960
    Location:308 → 392
    Ig; Immunoglobulin domain

  11. XM_029744388.1 → XP_029600248.1  kin of IRRE-like protein 3 isoform X11

    UniProtKB/TrEMBL
    A0A673XHY1, A0A673Z6C7
    Related
    ENSSTUP00000020978.1, ENSSTUT00000022058.1
    Conserved Domains (4) summary
    cd05759
    Location:136 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05758
    Location:388 → 485
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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