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LOC115182843 H-2 class II histocompatibility antigen, A-U alpha chain-like [ Salmo trutta (river trout) ]

Gene ID: 115182843, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115182843
Gene description
H-2 class II histocompatibility antigen, A-U alpha chain-like
See related
Ensembl:ENSSTUG00000021375
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
DAA
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Genomic context

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See LOC115182843 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822588.1 (3641..5620)

NW_021822588.1Genomic Context describing neighboring genes Neighboring gene H-2 class II histocompatibility antigen, I-E beta chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021822588 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide antigen assembly with MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H-2 class II histocompatibility antigen, A-U alpha chain-like
Names
MHC class II alpha chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NW_021822588.1 Reference fSalTru1.1 Primary Assembly

    Range
    3641..5620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029744254.1 → XP_029600114.1  H-2 class II histocompatibility antigen, A-U alpha chain-like

    UniProtKB/TrEMBL
    A0A673ZT47
    Related
    ENSSTUP00000050509.1, ENSSTUT00000052826.1
    Conserved Domains (2) summary
    pfam00993
    Location:23 → 97
    MHC_II_alpha; Class II histocompatibility antigen, alpha domain
    cl11960
    Location:103 → 196
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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