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LOC115182236 zinc finger protein 883-like [ Salmo trutta (river trout) ]

Gene ID: 115182236, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115182236
Gene description
zinc finger protein 883-like
See related
Ensembl:ENSSTUG00000027097
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115182236 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822406.1 (190556..197227)

NW_021822406.1Genomic Context describing neighboring genes Neighboring gene piggyBac transposable element-derived protein 4-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene zinc finger protein 773-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021822406 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115182236; zinc finger protein 883-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NW_021822406.1 Reference fSalTru1.1 Primary Assembly

    Range
    190556..197227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029743861.1 → XP_029599721.1  zinc finger protein 883-like isoform X1

    UniProtKB/TrEMBL
    A0A674AT67
    Related
    ENSSTUP00000062534.1, ENSSTUT00000065970.1
    Conserved Domains (3) summary
    COG5048
    Location:163 → 553
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:307 → 327
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:124 → 148
    zf-H2C2_2; Zinc-finger double domain

  2. XM_029743862.1 → XP_029599722.1  zinc finger protein 883-like isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:152 → 542
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:296 → 316
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_029743863.1 → XP_029599723.1  uncharacterized protein LOC115182236 isoform X3

Nucleotide Protein
Heading Accession and Version

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