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LOC115181916 gastrula zinc finger protein XlCGF17.1-like [ Salmo trutta (river trout) ]

Gene ID: 115181916, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115181916
Gene description
gastrula zinc finger protein XlCGF17.1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC115181916 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822351.1 (559598..570283)

NW_021822351.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 239-like Neighboring gene zinc finger protein 239-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene uncharacterized LOC115181936

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021822351 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF17.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NW_021822351.1 Reference fSalTru1.1 Primary Assembly

    Range
    559598..570283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029743610.1 → XP_029599470.1  gastrula zinc finger protein XlCGF17.1-like

    Conserved Domains (3) summary
    COG5048
    Location:136 → 287
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:112 → 132
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:96 → 120
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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