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LOC115181668 oocyte zinc finger protein XlCOF6.1-like [ Salmo trutta (river trout) ]

Gene ID: 115181668, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115181668
Gene description
oocyte zinc finger protein XlCOF6.1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115181668 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822308.1 (654415..660791, complement)

NW_021822308.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115181660 Neighboring gene zinc finger protein 239-like Neighboring gene carbohydrate sulfotransferase 12-like Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene BRCA1-associated ATM activator 1-like Neighboring gene eukaryotic translation initiation factor 3 subunit B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021822308 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF6.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NW_021822308.1 Reference fSalTru1.1 Primary Assembly

    Range
    654415..660791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029743501.1 → XP_029599361.1  oocyte zinc finger protein XlCOF6.1-like

    Conserved Domains (3) summary
    COG5048
    Location:103 → 339
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:319 → 400
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:239 → 259
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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