U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC115181015 polypeptide N-acetylgalactosaminyltransferase 1 [ Salmo trutta (river trout) ]

Gene ID: 115181015, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC115181015
Gene description
polypeptide N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSSTUG00000046513
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Annotation information
Annotation category: partial on reference assembly
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC115181015 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822211.1 (846154..882943, complement)

NW_021822211.1Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like Neighboring gene uncharacterized LOC115181026 Neighboring gene uncharacterized LOC115181016 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 1 Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_021822211 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NW_021822211.1 Reference fSalTru1.1 Primary Assembly

    Range
    846154..882943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029743130.1 → XP_029598990.1  polypeptide N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A674E9S5
    Related
    ENSSTUP00000104776.1, ENSSTUT00000112315.1
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases