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LOC115180439 protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like [ Salmo trutta (river trout) ]

Gene ID: 115180439, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115180439
Gene description
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like
See related
Ensembl:ENSSTUG00000010390
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
Glyt
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Genomic context

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See LOC115180439 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 3 NC_042959.1 (57318184..57353068)

Chromosome 3 - NC_042959.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115180434 Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene Golgi-associated kinase 1A-like Neighboring gene ectonucleoside triphosphate diphosphohydrolase 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042959.1 Chromosome 3 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like
Names
glycosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042959.1 Reference fSalTru1.1 Primary Assembly

    Range
    57318184..57353068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029742544.1 → XP_029598404.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A673XHL1
    Conserved Domains (2) summary
    cd00063
    Location:497 → 584
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:263 → 399
    DUF563; Protein of unknown function (DUF563)

  2. XM_029742525.1 → XP_029598385.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A673XHL1

  3. XM_029742534.1 → XP_029598394.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A673XHL1
    Related
    ENSSTUP00000023739.1, ENSSTUT00000024906.1

  4. XM_029742552.1 → XP_029598412.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A673XHL1
    Conserved Domains (2) summary
    cd00063
    Location:497 → 584
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:263 → 399
    DUF563; Protein of unknown function (DUF563)

  5. XM_029742560.1 → XP_029598420.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A673XHL1

  6. XM_029742566.1 → XP_029598426.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A673XHL1

  7. XM_029742573.1 → XP_029598433.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A673XHL1

RNA

  1. XR_003873092.1 RNA Sequence

  2. XR_003873093.1 RNA Sequence

Nucleotide Protein
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