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LOC115180025 zinc finger protein 420-like [ Salmo trutta (river trout) ]

Gene ID: 115180025, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115180025
Gene description
zinc finger protein 420-like
See related
Ensembl:ENSSTUG00000044337
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115180025 in Genome Data Viewer
Location:
chromosome: 40
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 40 NC_042996.1 (869784..880289)

Chromosome 40 - NC_042996.1Genomic Context describing neighboring genes Neighboring gene AIG1 domain-containing protein Neighboring gene GTPase IMAP family member 8-like Neighboring gene zinc finger protein 883-like Neighboring gene zinc finger protein 135-like Neighboring gene zinc finger protein 184-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042996.1 Chromosome 40 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 420-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042996.1 Reference fSalTru1.1 Primary Assembly

    Range
    869784..880289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029741898.1 → XP_029597758.1  zinc finger protein 420-like isoform X1

    UniProtKB/TrEMBL
    A0A674DSP9
    Related
    ENSSTUP00000098840.1, ENSSTUT00000106093.1
    Conserved Domains (4) summary
    COG5048
    Location:480 → 976
    COG5048; FOG: Zn-finger [General function prediction only]
    cd11657
    Location:21 → 209
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:1054 → 1074
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:1095 → 1118
    zf-H2C2_2; Zinc-finger double domain

  2. XM_029741899.1 → XP_029597759.1  zinc finger protein 420-like isoform X2

Nucleotide Protein
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Molecular Biology Databases