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LOC115179856 beta-1,3-galactosyltransferase 1-like [ Salmo trutta (river trout) ]

Gene ID: 115179856, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115179856
Gene description
beta-1,3-galactosyltransferase 1-like
See related
Ensembl:ENSSTUG00000050909
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115179856 in Genome Data Viewer
Location:
chromosome: 39
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 39 NC_042995.1 (13827220..13949944, complement)

Chromosome 39 - NC_042995.1Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 7-like Neighboring gene bile salt export pump-like Neighboring gene uncharacterized LOC115179765 Neighboring gene xin actin-binding repeat-containing protein 2-like Neighboring gene uncharacterized LOC115179371 Neighboring gene cysteine/serine-rich nuclear protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042995.1 Chromosome 39 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042995.1 Reference fSalTru1.1 Primary Assembly

    Range
    13827220..13949944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029741711.1 → XP_029597571.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A674F4X0
    Related
    ENSSTUP00000115601.1, ENSSTUT00000123684.1
    Conserved Domains (1) summary
    cl21608
    Location:94 → 282
    Galactosyl_T; Galactosyltransferase

  2. XM_029741710.1 → XP_029597570.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A674F4X0
    Conserved Domains (1) summary
    cl21608
    Location:94 → 282
    Galactosyl_T; Galactosyltransferase

  3. XM_029741709.1 → XP_029597569.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A674F4X0
    Conserved Domains (1) summary
    cl21608
    Location:94 → 282
    Galactosyl_T; Galactosyltransferase

RNA

  1. XR_003873006.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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