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LOC115179804 gastrula zinc finger protein XlCGF17.1-like [ Salmo trutta (river trout) ]

Gene ID: 115179804, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115179804
Gene description
gastrula zinc finger protein XlCGF17.1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115179804 in Genome Data Viewer
Location:
chromosome: 39
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 39 NC_042995.1 (9096001..9099839)

Chromosome 39 - NC_042995.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene NTPase KAP family P-loop domain-containing protein 1-like Neighboring gene zinc finger protein 239-like Neighboring gene zinc finger protein 658B-like Neighboring gene NTPase KAP family P-loop domain-containing protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042995.1 Chromosome 39 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF17.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042995.1 Reference fSalTru1.1 Primary Assembly

    Range
    9096001..9099839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029741596.1 → XP_029597456.1  gastrula zinc finger protein XlCGF17.1-like

    Conserved Domains (3) summary
    COG5048
    Location:126 → 324
    COG5048; FOG: Zn-finger [General function prediction only]
    TIGR00143
    Location:89 → 150
    hypF; [NiFe] hydrogenase maturation protein HypF
    sd00017
    Location:230 → 250
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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