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LOC115179537 gastrula zinc finger protein XlCGF17.1-like [ Salmo trutta (river trout) ]

Gene ID: 115179537, updated on 29-Aug-2020

Summary

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Gene symbol
LOC115179537
Gene description
gastrula zinc finger protein XlCGF17.1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115179537 in Genome Data Viewer
Location:
chromosome: 39
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 39 NC_042995.1 (9910465..9913748, complement)

Chromosome 39 - NC_042995.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein OZF-like Neighboring gene zinc finger protein 665-like Neighboring gene uncharacterized LOC115179589 Neighboring gene zinc finger protein 665-like Neighboring gene zinc finger protein 135-like Neighboring gene zinc finger protein 501-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042995.1 Chromosome 39 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF17.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042995.1 Reference fSalTru1.1 Primary Assembly

    Range
    9910465..9913748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029741154.1 → XP_029597014.1  gastrula zinc finger protein XlCGF17.1-like

    Conserved Domains (4) summary
    COG5048
    Location:106 → 262
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:20 → 102
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:110 → 130
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 287
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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