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LOC115179514 zinc finger protein 239-like [ Salmo trutta (river trout) ]

Gene ID: 115179514, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115179514
Gene description
zinc finger protein 239-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115179514 in Genome Data Viewer
Location:
chromosome: 39
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 39 NC_042995.1 (9095476..9133077)

Chromosome 39 - NC_042995.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene NTPase KAP family P-loop domain-containing protein 1-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene zinc finger protein 658B-like Neighboring gene NTPase KAP family P-loop domain-containing protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042995.1 Chromosome 39 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 239-like; zinc finger protein 883-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042995.1 Reference fSalTru1.1 Primary Assembly

    Range
    9095476..9133077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029741114.1 → XP_029596974.1  zinc finger protein 239-like isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:224 → 372
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:166 → 244
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:116 → 136
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_029741113.1 → XP_029596973.1  zinc finger protein 883-like isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:157 → 490
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:301 → 321
    ZF_C2H2; C2H2 Zn finger [structural motif]

RNA

  1. XR_003872929.1 RNA Sequence

  2. XR_003872930.1 RNA Sequence

  3. XR_003872928.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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