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LOC115179511 zinc finger protein 665-like [ Salmo trutta (river trout) ]

Gene ID: 115179511, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115179511
Gene description
zinc finger protein 665-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115179511 in Genome Data Viewer
Location:
chromosome: 39
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 39 NC_042995.1 (9831900..10346575, complement)

Chromosome 39 - NC_042995.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 420-like Neighboring gene zinc finger protein OZF-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene uncharacterized LOC115179589 Neighboring gene zinc finger protein 665-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene zinc finger protein 135-like Neighboring gene zinc finger protein 501-like Neighboring gene zinc finger protein 501-like Neighboring gene uncharacterized LOC115179590 Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene zinc finger protein 501-like Neighboring gene uncharacterized LOC115179571 Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene zinc finger protein 501-like Neighboring gene uncharacterized LOC115179580 Neighboring gene uncharacterized LOC115179575

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042995.1 Chromosome 39 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115179511; zinc finger protein 665-like; zinc finger protein OZF-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042995.1 Reference fSalTru1.1 Primary Assembly

    Range
    9831900..10346575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029741106.1 → XP_029596966.1  zinc finger protein 665-like isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:54 → 468
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:116 → 136
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_029741103.1 → XP_029596963.1  zinc finger protein 665-like isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:54 → 468
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:116 → 136
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_029741105.1 → XP_029596965.1  zinc finger protein 665-like isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:54 → 468
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:116 → 136
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_029741104.1 → XP_029596964.1  zinc finger protein 665-like isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:54 → 468
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:116 → 136
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_029741102.1 → XP_029596962.1  zinc finger protein OZF-like isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:106 → 520
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:168 → 188
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_029741107.1 → XP_029596967.1  zinc finger protein 665-like isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:54 → 468
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:116 → 136
    ZF_C2H2; C2H2 Zn finger [structural motif]

  7. XM_029741109.1 → XP_029596969.1  uncharacterized protein LOC115179511 isoform X5

  8. XM_029741108.1 → XP_029596968.1  uncharacterized protein LOC115179511 isoform X4

Nucleotide Protein
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