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LOC115178274 TNF receptor-associated factor 5-like [ Salmo trutta (river trout) ]

Gene ID: 115178274, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115178274
Gene description
TNF receptor-associated factor 5-like
See related
Ensembl:ENSSTUG00000020552
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115178274 in Genome Data Viewer
Location:
chromosome: 38
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 38 NC_042994.1 (20519777..20531964)

Chromosome 38 - NC_042994.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 1-like Neighboring gene peroxisomal biogenesis factor 6 Neighboring gene REST corepressor 3-like Neighboring gene zgc:172076 Neighboring gene MAP/microtubule affinity-regulating kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042994.1 Chromosome 38 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thioesterase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042994.1 Reference fSalTru1.1 Primary Assembly

    Range
    20519777..20531964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029739378.1 → XP_029595238.1  TNF receptor-associated factor 5-like isoform X1

    UniProtKB/TrEMBL
    A0A673ZNQ0, A0A673ZQ95
    Related
    ENSSTUP00000048862.1, ENSSTUT00000050964.1
    Conserved Domains (4) summary
    TIGR02168
    Location:264 → 434
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam02176
    Location:160 → 215
    zf-TRAF; TRAF-type zinc finger
    cd16642
    Location:73 → 117
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins
    cl02446
    Location:399 → 594
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

  2. XM_029739379.1 → XP_029595239.1  TNF receptor-associated factor 5-like isoform X2

    UniProtKB/TrEMBL
    A0A673ZNQ0
    Related
    ENSSTUP00000048919.1, ENSSTUT00000051023.1
Nucleotide Protein
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