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LOC115178199 zinc finger protein OZF-like [ Salmo trutta (river trout) ]

Gene ID: 115178199, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115178199
Gene description
zinc finger protein OZF-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115178199 in Genome Data Viewer
Location:
chromosome: 38
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 38 NC_042994.1 (27077131..27169158, complement)

Chromosome 38 - NC_042994.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 658B-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene zinc finger protein 2 homolog Neighboring gene vicilin-like seed storage protein At2g18540 Neighboring gene zinc finger protein 3-like Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene cilia- and flagella-associated protein 251-like Neighboring gene cilia- and flagella-associated protein 251-like Neighboring gene zinc finger protein 501-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042994.1 Chromosome 38 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 436-like; zinc finger protein OZF-like; zinc finger protein interacting with ribonucleoprotein K-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042994.1 Reference fSalTru1.1 Primary Assembly

    Range
    27077131..27169158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029739293.1 → XP_029595153.1  zinc finger protein OZF-like isoform X3

    UniProtKB/TrEMBL
    A0A673ZB36
    Conserved Domains (2) summary
    COG5048
    Location:55 → 379
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:141 → 161
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_029739290.1 → XP_029595150.1  zinc finger protein 436-like isoform X1

  3. XM_029739292.1 → XP_029595152.1  zinc finger protein interacting with ribonucleoprotein K-like isoform X2

Nucleotide Protein
Heading Accession and Version

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