U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC115177516 gastrula zinc finger protein XlCGF57.1-like [ Salmo trutta (river trout) ]

Gene ID: 115177516, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC115177516
Gene description
gastrula zinc finger protein XlCGF57.1-like
See related
Ensembl:ENSSTUG00000039674
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC115177516 in Genome Data Viewer
Location:
chromosome: 37
Exon count:
6
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 37 NC_042993.1 (10704092..10708555)

Chromosome 37 - NC_042993.1Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_042993.1 Chromosome 37 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
gastrula zinc finger protein XlCGF57.1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042993.1 Reference fSalTru1.1 Primary Assembly

    Range
    10704092..10708555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029738360.1 → XP_029594220.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A674D4F2
    Related
    ENSSTUP00000090401.1, ENSSTUT00000096149.1
    Conserved Domains (5) summary
    COG5048
    Location:465 → 548
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:407 → 490
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:581 → 598
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:313 → 337
    zf-H2C2_2; Zinc-finger double domain

  2. XM_029738361.1 → XP_029594221.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A674D4F2

  3. XM_029738359.1 → XP_029594219.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A674D4F2

  4. XM_029738363.1 → XP_029594223.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A674D4F2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases