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LOC115177271 zinc finger and SCAN domain-containing protein 2-like [ Salmo trutta (river trout) ]

Gene ID: 115177271, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115177271
Gene description
zinc finger and SCAN domain-containing protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115177271 in Genome Data Viewer
Location:
chromosome: 37
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 37 NC_042993.1 (29141191..29144883, complement)

Chromosome 37 - NC_042993.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium-transporting ATPase subunit alpha-3-like Neighboring gene prenylated Rab acceptor protein 1-like Neighboring gene zinc finger protein 135-like Neighboring gene triosephosphate isomerase B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042993.1 Chromosome 37 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042993.1 Reference fSalTru1.1 Primary Assembly

    Range
    29141191..29144883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029737899.1 → XP_029593759.1  zinc finger and SCAN domain-containing protein 2-like

    Conserved Domains (4) summary
    COG5048
    Location:136 → 432
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:371 → 391
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:229 → 251
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:299 → 323
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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