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LOC115177027 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [ Salmo trutta (river trout) ]

Gene ID: 115177027, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115177027
Gene description
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like
See related
Ensembl:ENSSTUG00000047078
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115177027 in Genome Data Viewer
Location:
chromosome: 37
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 37 NC_042993.1 (25058544..25061574, complement)

Chromosome 37 - NC_042993.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid type B receptor subunit 1-like Neighboring gene SH3 domain-binding protein 5-like Neighboring gene E3 ubiquitin-protein ligase RNF183-like Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042993.1 Chromosome 37 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042993.1 Reference fSalTru1.1 Primary Assembly

    Range
    25058544..25061574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029737472.1 → XP_029593332.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

    UniProtKB/TrEMBL
    A0A674EC82
    Related
    ENSSTUP00000105560.1, ENSSTUT00000113174.1
    Conserved Domains (1) summary
    cd02514
    Location:96 → 426
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
Nucleotide Protein
Heading Accession and Version

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