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LOC115176828 complement C3-like [ Salmo trutta (river trout) ]

Gene ID: 115176828, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115176828
Gene description
complement C3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115176828 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 3 NC_042959.1 (48534069..48539468)

Chromosome 3 - NC_042959.1Genomic Context describing neighboring genes Neighboring gene complement C3 Neighboring gene protein FAM177A1-like Neighboring gene protein FAM177A1-like Neighboring gene complement C3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042959.1 Chromosome 3 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
complement C3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042959.1 Reference fSalTru1.1 Primary Assembly

    Range
    48534069..48539468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029737158.1 → XP_029593018.1  complement C3-like

    UniProtKB/TrEMBL
    A0A674B3H0
    Conserved Domains (10) summary
    cd00017
    Location:678 → 746
    ANATO; Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to ...
    cd02896
    Location:998 → 1281
    complement_C3_C4_C5; Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the ...
    cd03583
    Location:1512 → 1662
    NTR_complement_C3; NTR/C345C domain, complement C3 subfamily; The NTR domain found in complement C3 is also known as the C345C domain because it occurs at the C-terminus of complement C3, C4 and C5. Complement C3 plays a pivotal role in the activation of the complement ...
    pfam00207
    Location:771 → 870
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:1398 → 1492
    A2M_recep; A-macroglobulin receptor
    pfam17789
    Location:368 → 458
    MG4; Macroglobulin domain MG4
    pfam17790
    Location:29 → 127
    MG1; Macroglobulin domain MG1
    pfam17791
    Location:241 → 322
    MG3; Macroglobulin domain MG3
    pfam01835
    Location:133 → 239
    A2M_N; MG2 domain
    pfam07703
    Location:466 → 606
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
Nucleotide Protein
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