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LOC115176716 probable C-mannosyltransferase DPY19L1 [ Salmo trutta (river trout) ]

Gene ID: 115176716, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115176716
Gene description
probable C-mannosyltransferase DPY19L1
See related
Ensembl:ENSSTUG00000044411
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115176716 in Genome Data Viewer
Location:
chromosome: 37
Exon count:
22
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 37 NC_042993.1 (21138229..21150727)

Chromosome 37 - NC_042993.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115177198 Neighboring gene T-box transcription factor TBX20-like Neighboring gene fucolectin-like Neighboring gene fucolectin-like Neighboring gene fucolectin-6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042993.1 Chromosome 37 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042993.1 Reference fSalTru1.1 Primary Assembly

    Range
    21138229..21150727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029736924.1 → XP_029592784.1  probable C-mannosyltransferase DPY19L1

    UniProtKB/TrEMBL
    A0A674DYS4, A0A674DZD3
    Related
    ENSSTUP00000100864.1, ENSSTUT00000108218.1
    Conserved Domains (1) summary
    pfam10034
    Location:84 → 735
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein
Heading Accession and Version

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