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si:dkeyp-84f3.5 uncharacterized LOC115176616 [ Salmo trutta (river trout) ]

Gene ID: 115176616, updated on 17-Mar-2024

Summary

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Gene symbol
si:dkeyp-84f3.5
Gene description
uncharacterized LOC115176616
See related
Ensembl:ENSSTUG00000042312
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See si:dkeyp-84f3.5 in Genome Data Viewer
Location:
chromosome: 37
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 37 NC_042993.1 (11796598..11804684, complement)

Chromosome 37 - NC_042993.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115177531 Neighboring gene uncharacterized LOC115177528 Neighboring gene chemokine-like receptor 1 Neighboring gene hyaluronan synthase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042993.1 Chromosome 37 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 2 homolog
Names
C2H2-type zinc finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042993.1 Reference fSalTru1.1 Primary Assembly

    Range
    11796598..11804684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029736725.1 → XP_029592585.1  zinc finger protein 2 homolog

    UniProtKB/TrEMBL
    A0A674DF59
    Related
    ENSSTUP00000094535.1, ENSSTUT00000101310.1
    Conserved Domains (2) summary
    sd00017
    Location:134 → 154
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:413 → 435
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
Heading Accession and Version

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