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LOC115176236 H-2 class II histocompatibility antigen, E-S beta chain-like [ Salmo trutta (river trout) ]

Gene ID: 115176236, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115176236
Gene description
H-2 class II histocompatibility antigen, E-S beta chain-like
See related
Ensembl:ENSSTUG00000034211
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115176236 in Genome Data Viewer
Location:
chromosome: 36
Exon count:
6
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 36 NC_042992.1 (498192..502800, complement)

Chromosome 36 - NC_042992.1Genomic Context describing neighboring genes Neighboring gene kelch-like family member 38a Neighboring gene uncharacterized LOC115176235 Neighboring gene H-2 class II histocompatibility antigen, A-U alpha chain-like Neighboring gene spire-type actin nucleation factor 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042992.1 Chromosome 36 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide antigen assembly with MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H-2 class II histocompatibility antigen, E-S beta chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042992.1 Reference fSalTru1.1 Primary Assembly

    Range
    498192..502800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029736098.1 → XP_029591958.1  H-2 class II histocompatibility antigen, E-S beta chain-like isoform X1

    UniProtKB/TrEMBL
    A0A674C2P1
    Related
    ENSSTUP00000077593.1, ENSSTUT00000082639.1
    Conserved Domains (2) summary
    smart00921
    Location:30 → 99
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    pfam07654
    Location:115 → 196
    C1-set; Immunoglobulin C1-set domain

  2. XM_029736100.1 → XP_029591960.1  H-2 class II histocompatibility antigen, E-S beta chain-like isoform X2

Nucleotide Protein
Heading Accession and Version

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