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LOC115175988 exostosin-1c [ Salmo trutta (river trout) ]

Gene ID: 115175988, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115175988
Gene description
exostosin-1c
See related
Ensembl:ENSSTUG00000023614
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115175988 in Genome Data Viewer
Location:
chromosome: 36
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 36 NC_042992.1 (36026779..36123153, complement)

Chromosome 36 - NC_042992.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115175987 Neighboring gene mediator of RNA polymerase II transcription subunit 30-like Neighboring gene uncharacterized LOC115175992 Neighboring gene probable thiopurine S-methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042992.1 Chromosome 36 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1c

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042992.1 Reference fSalTru1.1 Primary Assembly

    Range
    36026779..36123153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029735698.1 → XP_029591558.1  exostosin-1c isoform X1

    UniProtKB/TrEMBL
    A0A674A9R6
    Related
    ENSSTUP00000055657.1, ENSSTUT00000058222.1
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 738
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_029735697.1 → XP_029591557.1  exostosin-1c isoform X1

    UniProtKB/TrEMBL
    A0A674A9R6
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 738
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_029735696.1 → XP_029591556.1  exostosin-1c isoform X1

    UniProtKB/TrEMBL
    A0A674A9R6

  4. XM_029735699.1 → XP_029591559.1  exostosin-1c isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases