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capn3b calpain 3b [ Salmo trutta (river trout) ]

Gene ID: 115175025, updated on 17-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
Ensembl:ENSSTUG00000046556
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 35
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 35 NC_042991.1 (29777624..29800017)

Chromosome 35 - NC_042991.1Genomic Context describing neighboring genes Neighboring gene macoilin-like Neighboring gene nuclear receptor binding protein 1 Neighboring gene zinc finger protein 106-like Neighboring gene churchill domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042991.1 Chromosome 35 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042991.1 Reference fSalTru1.1 Primary Assembly

    Range
    29777624..29800017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029734147.1 → XP_029590007.1  calpain-3-like

    Related
    ENSSTUP00000104300.1, ENSSTUT00000111820.1
    Conserved Domains (5) summary
    cd15897
    Location:593 → 620
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:593 → 760
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:70 → 366
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:387 → 531
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:535 → 591
    Calpain_u2; Unstructured region on Calpain-3
Nucleotide Protein
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