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LOC115174903 heparan sulfate glucosamine 3-O-sulfotransferase 5-like [ Salmo trutta (river trout) ]

Gene ID: 115174903, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115174903
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 5-like
See related
Ensembl:ENSSTUG00000038432
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115174903 in Genome Data Viewer
Location:
chromosome: 35
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 35 NC_042991.1 (24040309..24149620, complement)

Chromosome 35 - NC_042991.1Genomic Context describing neighboring genes Neighboring gene myristoylated alanine-rich C-kinase substrate-like Neighboring gene histone deacetylase 2-like Neighboring gene tyrosine-protein kinase SRK2-like Neighboring gene 5'-nucleotidase domain-containing protein 1-like Neighboring gene collagen alpha-1(X) chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042991.1 Chromosome 35 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042991.1 Reference fSalTru1.1 Primary Assembly

    Range
    24040309..24149620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029733912.1 → XP_029589772.1  heparan sulfate glucosamine 3-O-sulfotransferase 5-like

    UniProtKB/TrEMBL
    A0A674CUX0
    Related
    ENSSTUP00000087233.1, ENSSTUT00000092855.1
    Conserved Domains (1) summary
    pfam00685
    Location:90 → 330
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_029733913.1 → XP_029589773.1  heparan sulfate glucosamine 3-O-sulfotransferase 5-like

    UniProtKB/TrEMBL
    A0A674CUX0
    Conserved Domains (1) summary
    pfam00685
    Location:90 → 330
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
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