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LOC115173512 zinc finger protein 227-like [ Salmo trutta (river trout) ]

Gene ID: 115173512, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115173512
Gene description
zinc finger protein 227-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115173512 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 34 NC_042990.1 (9572873..9598780, complement)

Chromosome 34 - NC_042990.1Genomic Context describing neighboring genes Neighboring gene intermediate filament family orphan 1-like Neighboring gene vesicle-associated membrane protein 2-like Neighboring gene zinc finger and SCAN domain-containing protein 20-like Neighboring gene chromodomain-helicase-DNA-binding protein 4-like Neighboring gene transfer RNA alanine (anticodon UGC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042990.1 Chromosome 34 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of telomere maintenance via telomere lengthening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of shelterin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115173512; zinc finger protein 227-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042990.1 Reference fSalTru1.1 Primary Assembly

    Range
    9572873..9598780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029731658.1 → XP_029587518.1  zinc finger protein 227-like isoform X1

    Conserved Domains (5) summary
    COG5048
    Location:846 → 1313
    COG5048; FOG: Zn-finger [General function prediction only]
    cd11657
    Location:134 → 315
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:1325 → 1345
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:1365 → 1388
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:11 → 96
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  2. XM_029731659.1 → XP_029587519.1  uncharacterized protein LOC115173512 isoform X2

    Conserved Domains (7) summary
    COG5048
    Location:891 → 1128
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5236
    Location:756 → 945
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    cd11657
    Location:134 → 315
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:1010 → 1030
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:677 → 697
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:689 → 714
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:11 → 96
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  3. XM_029731662.1 → XP_029587522.1  uncharacterized protein LOC115173512 isoform X4

  4. XM_029731660.1 → XP_029587520.1  uncharacterized protein LOC115173512 isoform X3

    Conserved Domains (2) summary
    pfam13837
    Location:11 → 96
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl18929
    Location:138 → 248
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
Nucleotide Protein
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