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ext1b exostosin glycosyltransferase 1b [ Salmo trutta (river trout) ]

Gene ID: 115173416, updated on 17-Mar-2024

Summary

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Gene symbol
ext1b
Gene description
exostosin glycosyltransferase 1b
See related
Ensembl:ENSSTUG00000041500
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See ext1b in Genome Data Viewer
Location:
chromosome: 34
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 34 NC_042990.1 (6556565..6666843, complement)

Chromosome 34 - NC_042990.1Genomic Context describing neighboring genes Neighboring gene zinc transporter 8-like Neighboring gene mediator complex subunit 30 Neighboring gene sterile alpha motif domain containing 12 Neighboring gene actin binding Rho activating protein b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042990.1 Chromosome 34 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042990.1 Reference fSalTru1.1 Primary Assembly

    Range
    6556565..6666843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029731463.1 → XP_029587323.1  exostosin-1b

    UniProtKB/TrEMBL
    A0A674DC87
    Related
    ENSSTUP00000093490.1, ENSSTUT00000099908.1
    Conserved Domains (2) summary
    pfam03016
    Location:104 → 390
    Exostosin; Exostosin family
    pfam09258
    Location:474 → 719
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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Molecular Biology Databases