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LOC115173034 calpain-3-like [ Salmo trutta (river trout) ]

Gene ID: 115173034, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115173034
Gene description
calpain-3-like
See related
Ensembl:ENSSTUG00000037643
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115173034 in Genome Data Viewer
Location:
chromosome: 33
Exon count:
21
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 33 NC_042989.1 (42425947..42477030)

Chromosome 33 - NC_042989.1Genomic Context describing neighboring genes Neighboring gene beta-mannosidase-like Neighboring gene vam6/Vps39-like protein Neighboring gene extensin-like Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042989.1 Chromosome 33 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042989.1 Reference fSalTru1.1 Primary Assembly

    Range
    42425947..42477030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029731007.1 → XP_029586867.1  calpain-3-like

    UniProtKB/TrEMBL
    A0A673YNF4
    Related
    ENSSTUP00000085570.1, ENSSTUT00000091031.1
    Conserved Domains (4) summary
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 713
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 515
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
Heading Accession and Version

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