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LOC115171793 zinc finger protein 286A-like [ Salmo trutta (river trout) ]

Gene ID: 115171793, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115171793
Gene description
zinc finger protein 286A-like
See related
Ensembl:ENSSTUG00000016382
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115171793 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 3 NC_042959.1 (28335134..28339594, complement)

Chromosome 3 - NC_042959.1Genomic Context describing neighboring genes Neighboring gene smoothelin-like protein 2 Neighboring gene chromatin assembly factor 1 subunit A-A-like Neighboring gene solute carrier family 43 member 3-like Neighboring gene reticulon-4 receptor-like 2 Neighboring gene selenoprotein H-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042959.1 Chromosome 3 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 286A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042959.1 Reference fSalTru1.1 Primary Assembly

    Range
    28335134..28339594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029728942.1 → XP_029584802.1  zinc finger protein 286A-like

    UniProtKB/TrEMBL
    A0A673YV91
    Related
    ENSSTUP00000038382.1, ENSSTUT00000040118.1
    Conserved Domains (3) summary
    COG5048
    Location:381 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:596 → 616
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:608 → 633
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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