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THITE_34523 polysaccharide lyase family 4 protein [ Thermothielavioides terrestris NRRL 8126 ]

Gene ID: 11517161, updated on 14-Dec-2023

Summary

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Gene symbol
THITE_34523
Gene description
polysaccharide lyase family 4 protein
Locus tag
THITE_34523
Gene type
protein coding
RNA name
polysaccharide lyase family 4 protein
RefSeq status
PROVISIONAL
Organism
Thermothielavioides terrestris NRRL 8126 (strain: NRRL 8126)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Chaetomiaceae; Thermothielavioides; Thermothielavioides terrestris
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Genomic context

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See THITE_34523 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_016458.1 (447277..449409)

Chromosome 2 - NC_016458.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016458.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris. Berka RM, et al. Nat Biotechnol, 2011 Oct 2. PMID 21964414

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polysaccharide lyase family 4 protein
XP_003651267.1
  • CAZy_ID 269740

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016458.1 Reference assembly

    Range
    447277..449409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003651219.1 → XP_003651267.1  polysaccharide lyase family 4 protein [Thermothielavioides terrestris NRRL 8126]

    See identical proteins and their annotated locations for XP_003651267.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3S4EV65, G2R1V5
    Conserved Domains (3) summary
    cd10316
    Location:352 → 444
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cd10320
    Location:23 → 313
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cl15687
    Location:456 → 674
    RGL4_C; C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
Nucleotide Protein
Heading Accession and Version

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