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LOC115171401 THO complex subunit 4-like [ Salmo trutta (river trout) ]

Gene ID: 115171401, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115171401
Gene description
THO complex subunit 4-like
See related
Ensembl:ENSSTUG00000007598
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115171401 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
6
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 32 NC_042988.1 (21484242..21487657)

Chromosome 32 - NC_042988.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 12B-like Neighboring gene mapk-regulated corepressor-interacting protein 1-like Neighboring gene rho GDP-dissociation inhibitor 1-like Neighboring gene cerebellar degeneration-related protein 2-like Neighboring gene RecQ helicase-like 5 Neighboring gene uncharacterized LOC115171407 Neighboring gene uncharacterized LOC115171408

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042988.1 Chromosome 32 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THO complex subunit 4-like; aly/REF export factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042988.1 Reference fSalTru1.1 Primary Assembly

    Range
    21484242..21487657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029728179.1 → XP_029584039.1  THO complex subunit 4-like isoform X2

    UniProtKB/TrEMBL
    A0A673X6X1, A0A673X6Z7
    Related
    ENSSTUP00000016707.1, ENSSTUT00000017612.1
    Conserved Domains (2) summary
    cd12680
    Location:118 → 191
    RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins
    pfam13865
    Location:200 → 263
    FoP_duplication; C-terminal duplication domain of Friend of PRMT1

  2. XM_029728178.1 → XP_029584038.1  aly/REF export factor 2-like isoform X1

    Conserved Domains (2) summary
    cd12680
    Location:157 → 230
    RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins
    pfam13865
    Location:239 → 302
    FoP_duplication; C-terminal duplication domain of Friend of PRMT1
Nucleotide Protein
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