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LOC115171185 heparan sulfate glucosamine 3-O-sulfotransferase 2-like [ Salmo trutta (river trout) ]

Gene ID: 115171185, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115171185
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 2-like
See related
Ensembl:ENSSTUG00000010558
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115171185 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 32 NC_042988.1 (14962149..14980081)

Chromosome 32 - NC_042988.1Genomic Context describing neighboring genes Neighboring gene heparan sulfate glucosamine 3-O-sulfotransferase 4-like Neighboring gene uncharacterized LOC115170613 Neighboring gene ubiquitin carboxyl-terminal hydrolase 31-like Neighboring gene interleukin-21 receptor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042988.1 Chromosome 32 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042988.1 Reference fSalTru1.1 Primary Assembly

    Range
    14962149..14980081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029727761.1 → XP_029583621.1  heparan sulfate glucosamine 3-O-sulfotransferase 2-like

    UniProtKB/TrEMBL
    A0A673XRW7
    Related
    ENSSTUP00000024118.1, ENSSTUT00000025305.1
    Conserved Domains (1) summary
    pfam00685
    Location:131 → 368
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases