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LOC115170662 interferon a3-like [ Salmo trutta (river trout) ]

Gene ID: 115170662, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115170662
Gene description
interferon a3-like
See related
Ensembl:ENSSTUG00000041170
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115170662 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 32 NC_042988.1 (7940983..7942439)

Chromosome 32 - NC_042988.1Genomic Context describing neighboring genes Neighboring gene interferon a3-like Neighboring gene uncharacterized LOC115170958 Neighboring gene uncharacterized LOC115170957 Neighboring gene interferon a3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042988.1 Chromosome 32 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon a3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042988.1 Reference fSalTru1.1 Primary Assembly

    Range
    7940983..7942439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029726907.1 → XP_029582767.1  interferon a3-like

    UniProtKB/TrEMBL
    A0A674DAZ2, A0A674DD79, A0A674DDN6
    Related
    ENSSTUP00000093055.1, ENSSTUT00000099302.1
    Conserved Domains (1) summary
    cl00092
    Location:62 → 180
    IFab; Interferon alpha, beta. Includes also interferon omega and tau. Different from interferon gamma family. Type I interferons(alpha, beta) belong to the larger helical cytokine superfamily, which includes growth hormones, interleukins, several ...
Nucleotide Protein
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