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LOC115170240 zinc finger protein ZFMSA12A-like [ Salmo trutta (river trout) ]

Gene ID: 115170240, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115170240
Gene description
zinc finger protein ZFMSA12A-like
See related
Ensembl:ENSSTUG00000029075
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115170240 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 31 NC_042987.1 (43182663..43194690)

Chromosome 31 - NC_042987.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115170239 Neighboring gene trophoblast glycoprotein-like Neighboring gene zinc finger protein 414 Neighboring gene cell wall protein DAN4-like Neighboring gene casein kinase I-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042987.1 Chromosome 31 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ZFMSA12A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042987.1 Reference fSalTru1.1 Primary Assembly

    Range
    43182663..43194690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029726633.1 → XP_029582493.1  zinc finger protein ZFMSA12A-like isoform X1

    UniProtKB/TrEMBL
    A0A674B5Z1
    Related
    ENSSTUP00000066457.1, ENSSTUT00000070463.1

  2. XM_029726634.1 → XP_029582494.1  zinc finger protein ZFMSA12A-like isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:343 → 694
    COG5048; FOG: Zn-finger [General function prediction only]
    cd11657
    Location:14 → 199
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:522 → 542
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:464 → 485
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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