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LOC115170149 zinc finger protein 16-like [ Salmo trutta (river trout) ]

Gene ID: 115170149, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115170149
Gene description
zinc finger protein 16-like
See related
Ensembl:ENSSTUG00000008837
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115170149 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 31 NC_042987.1 (37303394..37313879, complement)

Chromosome 31 - NC_042987.1Genomic Context describing neighboring genes Neighboring gene activated CDC42 kinase 1-like Neighboring gene transferrin receptor protein 1-like Neighboring gene tetratricopeptide repeat protein 19, mitochondrial-like Neighboring gene nuclear receptor-binding protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042987.1 Chromosome 31 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115170149; zinc finger protein 16-like; zinc finger protein 316-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042987.1 Reference fSalTru1.1 Primary Assembly

    Range
    37303394..37313879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029726486.1 → XP_029582346.1  zinc finger protein 16-like isoform X4

    UniProtKB/TrEMBL
    A0A673X6M7

  2. XM_029726483.1 → XP_029582343.1  uncharacterized protein LOC115170149 isoform X2

    UniProtKB/TrEMBL
    A0A673X6M7
    Related
    ENSSTUP00000019865.1, ENSSTUT00000020872.1

  3. XM_029726482.1 → XP_029582342.1  zinc finger protein 316-like isoform X1

    UniProtKB/TrEMBL
    A0A673X6M7, A0A673X6N6
    Related
    ENSSTUP00000019849.1, ENSSTUT00000020857.1
    Conserved Domains (6) summary
    COG5048
    Location:609 → 1094
    COG5048; FOG: Zn-finger [General function prediction only]
    cd11657
    Location:27 → 209
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:1066 → 1086
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:984 → 1003
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:1106 → 1129
    zf-H2C2_2; Zinc-finger double domain
    pfam15140
    Location:766 → 882
    DUF4573; Domain of unknown function (DUF4573)

  4. XM_029726484.1 → XP_029582344.1  zinc finger protein 316-like isoform X3

    UniProtKB/TrEMBL
    A0A673X6M7
    Conserved Domains (6) summary
    COG5048
    Location:570 → 1055
    COG5048; FOG: Zn-finger [General function prediction only]
    cd11657
    Location:1 → 170
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:1027 → 1047
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:945 → 964
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:1067 → 1090
    zf-H2C2_2; Zinc-finger double domain
    pfam15140
    Location:727 → 843
    DUF4573; Domain of unknown function (DUF4573)
Nucleotide Protein
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