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LOC115169866 aspartyl/asparaginyl beta-hydroxylase-like [ Salmo trutta (river trout) ]

Gene ID: 115169866, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115169866
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
Ensembl:ENSSTUG00000046988
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115169866 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 31 NC_042987.1 (28385464..28415448, complement)

Chromosome 31 - NC_042987.1Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-2A Neighboring gene chromodomain-helicase-DNA-binding protein 7-like Neighboring gene alpha-tocopherol transfer protein-like Neighboring gene uncharacterized LOC115169868 Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042987.1 Chromosome 31 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042987.1 Reference fSalTru1.1 Primary Assembly

    Range
    28385464..28415448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029725926.1 → XP_029581786.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    Conserved Domains (1) summary
    pfam05279
    Location:23 → 232
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_029725930.1 → XP_029581790.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X7

  3. XM_029725927.1 → XP_029581787.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

  4. XM_029725925.1 → XP_029581785.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

  5. XM_029725928.1 → XP_029581788.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

  6. XM_029725924.1 → XP_029581784.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

  7. XM_029725929.1 → XP_029581789.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X6

    UniProtKB/TrEMBL
    A0A674EBK8, A0A674EC16
    Related
    ENSSTUP00000105332.1, ENSSTUT00000112941.1
Nucleotide Protein
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