U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC115169770 translation initiation factor eIF-2B subunit gamma-like [ Salmo trutta (river trout) ]

Gene ID: 115169770, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC115169770
Gene description
translation initiation factor eIF-2B subunit gamma-like
See related
Ensembl:ENSSTUG00000015574
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC115169770 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 31 NC_042987.1 (22501847..22554228, complement)

Chromosome 31 - NC_042987.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIF2C Neighboring gene protein patched homolog 1-like Neighboring gene serine/threonine-protein kinase PLK3-like Neighboring gene calcyclin binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_042987.1 Chromosome 31 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoplasmic translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 2B complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of guanyl-nucleotide exchange factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
translation initiation factor eIF-2B subunit gamma-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042987.1 Reference fSalTru1.1 Primary Assembly

    Range
    22501847..22554228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029725695.1 → XP_029581555.1  translation initiation factor eIF-2B subunit gamma-like

    UniProtKB/TrEMBL
    A0A673YPC6, A0A673YPD9
    Related
    ENSSTUP00000036541.1, ENSSTUT00000038189.1
    Conserved Domains (2) summary
    cd04198
    Location:3 → 216
    eIF-2B_gamma_N; The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2
    COG1208
    Location:2 → 434
    GCD1; NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis proteins [Translation, ribosomal structure and biogenesis, Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases