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LOC115168934 nuclear RNA export factor 1-like [ Salmo trutta (river trout) ]

Gene ID: 115168934, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115168934
Gene description
nuclear RNA export factor 1-like
See related
Ensembl:ENSSTUG00000001367
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115168934 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
23
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 3 NC_042959.1 (14289908..14312263, complement)

Chromosome 3 - NC_042959.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase activator subunit 11-2 Neighboring gene autophagy related 2A Neighboring gene inositol-trisphosphate 3-kinase B-like Neighboring gene uncharacterized LOC115168997 Neighboring gene seipin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042959.1 Chromosome 3 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042959.1 Reference fSalTru1.1 Primary Assembly

    Range
    14289908..14312263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029724476.1 → XP_029580336.1  nuclear RNA export factor 1-like isoform X2

    UniProtKB/TrEMBL
    A0A673VSZ9
    Conserved Domains (5) summary
    smart00804
    Location:612 → 674
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:281 → 323
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam13855
    Location:327 → 384
    LRR_8; Leucine rich repeat
    pfam09162
    Location:173 → 254
    Tap-RNA_bind; Tap, RNA-binding
    cl09109
    Location:446 → 592
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...

  2. XM_029724467.1 → XP_029580327.1  nuclear RNA export factor 1-like isoform X1

    UniProtKB/TrEMBL
    A0A673VSZ9

  3. XM_029724485.1 → XP_029580345.1  nuclear RNA export factor 1-like isoform X3

    UniProtKB/TrEMBL
    A0A673VSZ9

  4. XM_029724495.1 → XP_029580355.1  nuclear RNA export factor 1-like isoform X4

    UniProtKB/TrEMBL
    A0A673VSZ9
    Conserved Domains (5) summary
    smart00804
    Location:569 → 631
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:238 → 280
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam13855
    Location:284 → 341
    LRR_8; Leucine rich repeat
    pfam09162
    Location:130 → 211
    Tap-RNA_bind; Tap, RNA-binding
    cl09109
    Location:403 → 549
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...

  5. XM_029724505.1 → XP_029580365.1  nuclear RNA export factor 1-like isoform X5

    UniProtKB/TrEMBL
    A0A673VSZ9
    Related
    ENSSTUP00000002820.1, ENSSTUT00000003001.1
    Conserved Domains (5) summary
    smart00804
    Location:545 → 607
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:214 → 256
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam13855
    Location:260 → 317
    LRR_8; Leucine rich repeat
    pfam09162
    Location:106 → 187
    Tap-RNA_bind; Tap, RNA-binding
    cl09109
    Location:379 → 525
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...
Nucleotide Protein
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