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LOC115168733 host cell factor 1-like [ Salmo trutta (river trout) ]

Gene ID: 115168733, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115168733
Gene description
host cell factor 1-like
See related
Ensembl:ENSSTUG00000007278
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115168733 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
32
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 30 NC_042986.1 (43072366..43126614)

Chromosome 30 - NC_042986.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding protein 2-like Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene siderophore biosynthesis regulatory protein URBS1-like Neighboring gene membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042986.1 Chromosome 30 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042986.1 Reference fSalTru1.1 Primary Assembly

    Range
    43072366..43126614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029724270.1 → XP_029580130.1  host cell factor 1-like isoform X1

    UniProtKB/TrEMBL
    A0A673X493, A0A673X5V5
    Related
    ENSSTUP00000016337.1, ENSSTUT00000017222.1
    Conserved Domains (5) summary
    PLN02153
    Location:7 → 308
    PLN02153; epithiospecifier protein
    cd00063
    Location:1696 → 1726
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:192 → 241
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:363 → 780
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:307 → 339
    Kelch_5; Kelch motif

  2. XM_029724273.1 → XP_029580133.1  host cell factor 1-like isoform X3

    UniProtKB/TrEMBL
    A0A673X493

  3. XM_029724271.1 → XP_029580131.1  host cell factor 1-like isoform X1

    UniProtKB/TrEMBL
    A0A673X493, A0A673X5V5

  4. XM_029724272.1 → XP_029580132.1  host cell factor 1-like isoform X2

    UniProtKB/TrEMBL
    A0A673X493, A0A673X5G4
    Related
    ENSSTUP00000016197.1, ENSSTUT00000017075.1
    Conserved Domains (5) summary
    PLN02153
    Location:7 → 308
    PLN02153; epithiospecifier protein
    cd00063
    Location:1685 → 1715
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:192 → 241
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:363 → 780
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:307 → 339
    Kelch_5; Kelch motif

  5. XM_029724274.1 → XP_029580134.1  host cell factor 1-like isoform X4

    UniProtKB/TrEMBL
    A0A673X493
    Conserved Domains (2) summary
    cd00063
    Location:1405 → 1435
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13854
    Location:16 → 48
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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