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LOC115165405 tumor necrosis factor receptor superfamily member 14-like [ Salmo trutta (river trout) ]

Gene ID: 115165405, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115165405
Gene description
tumor necrosis factor receptor superfamily member 14-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115165405 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
19
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 28 NC_042984.1 (9284810..9315367)

Chromosome 28 - NC_042984.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 14-like Neighboring gene uncharacterized LOC115165407 Neighboring gene uncharacterized LOC115165408 Neighboring gene uncharacterized LOC115165409 Neighboring gene serine--tRNA ligase, cytoplasmic Neighboring gene transmembrane protein 106C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042984.1 Chromosome 28 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to Gram-positive bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of alpha-beta T cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytokine production involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of peptidyl-tyrosine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 14-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042984.1 Reference fSalTru1.1 Primary Assembly

    Range
    9284810..9315367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029718491.1 → XP_029574351.1  tumor necrosis factor receptor superfamily member 14-like isoform X2

  2. XM_029718490.1 → XP_029574350.1  tumor necrosis factor receptor superfamily member 14-like isoform X1

    Conserved Domains (3) summary
    cd00185
    Location:119 → 168
    TNFRSF; CRD2 [structural motif]
    cd13405
    Location:26 → 136
    TNFRSF14_teleost; Tumor necrosis factor receptor superfamily member 14 (TNFRSF14) in teleost; also known as herpes virus entry mediator (HVEM)
    cl22855
    Location:92 → 212
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  3. XM_029718489.1 → XP_029574349.1  tumor necrosis factor receptor superfamily member 14-like isoform X1

RNA

  1. XR_003870163.1 RNA Sequence

  2. XR_003870162.1 RNA Sequence

  3. XR_003870161.1 RNA Sequence

Nucleotide Protein
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