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LOC115165383 tumor necrosis factor receptor superfamily member 14-like [ Salmo trutta (river trout) ]

Gene ID: 115165383, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115165383
Gene description
tumor necrosis factor receptor superfamily member 14-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115165383 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 28 NC_042984.1 (9107206..9145433, complement)

Chromosome 28 - NC_042984.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115165398 Neighboring gene tumor necrosis factor receptor superfamily member 14-like Neighboring gene uncharacterized LOC115165400 Neighboring gene uncharacterized LOC115165393 Neighboring gene uncharacterized LOC115165404 Neighboring gene tumor necrosis factor receptor superfamily member 14-like Neighboring gene uncharacterized LOC115165402 Neighboring gene tumor necrosis factor receptor superfamily member 14-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042984.1 Chromosome 28 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to Gram-negative bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to Gram-positive bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of alpha-beta T cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytokine production involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of peptidyl-tyrosine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 14-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042984.1 Reference fSalTru1.1 Primary Assembly

    Range
    9107206..9145433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029718475.1 → XP_029574335.1  tumor necrosis factor receptor superfamily member 14-like

    UniProtKB/TrEMBL
    A0A673ZAE4
    Conserved Domains (3) summary
    cd00185
    Location:119 → 168
    TNFRSF; CRD2 [structural motif]
    cd13405
    Location:26 → 136
    TNFRSF14_teleost; Tumor necrosis factor receptor superfamily member 14 (TNFRSF14) in teleost; also known as herpes virus entry mediator (HVEM)
    cl22855
    Location:92 → 208
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

RNA

  1. XR_003870141.1 RNA Sequence

  2. XR_003870142.1 RNA Sequence

  3. XR_003870143.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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