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LOC115165378 tumor necrosis factor receptor superfamily member 14-like [ Salmo trutta (river trout) ]

Gene ID: 115165378, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115165378
Gene description
tumor necrosis factor receptor superfamily member 14-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115165378 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 28 NC_042984.1 (8842656..8858709, complement)

Chromosome 28 - NC_042984.1Genomic Context describing neighboring genes Neighboring gene protein kinase C zeta type-like Neighboring gene tumor necrosis factor receptor superfamily member 14-like Neighboring gene uncharacterized LOC115165377 Neighboring gene uncharacterized LOC115165397 Neighboring gene tumor necrosis factor receptor superfamily member 14-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042984.1 Chromosome 28 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to Gram-negative bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to Gram-positive bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of alpha-beta T cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytokine production involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of peptidyl-tyrosine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 14-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042984.1 Reference fSalTru1.1 Primary Assembly

    Range
    8842656..8858709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029718460.1 → XP_029574320.1  tumor necrosis factor receptor superfamily member 14-like isoform X2

    Conserved Domains (3) summary
    cd00185
    Location:119 → 164
    TNFRSF; CRD2 [structural motif]
    cd13405
    Location:21 → 132
    TNFRSF14_teleost; Tumor necrosis factor receptor superfamily member 14 (TNFRSF14) in teleost; also known as herpes virus entry mediator (HVEM)
    cl22855
    Location:90 → 183
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_029718459.1 → XP_029574319.1  tumor necrosis factor receptor superfamily member 14-like isoform X1

    Conserved Domains (3) summary
    cd00185
    Location:126 → 171
    TNFRSF; CRD2 [structural motif]
    cd13405
    Location:28 → 139
    TNFRSF14_teleost; Tumor necrosis factor receptor superfamily member 14 (TNFRSF14) in teleost; also known as herpes virus entry mediator (HVEM)
    cl22855
    Location:97 → 190
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
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