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LOC115164260 VIP36-like protein [ Salmo trutta (river trout) ]

Gene ID: 115164260, updated on 19-Jun-2024

Summary

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Gene symbol
LOC115164260
Gene description
VIP36-like protein
See related
Ensembl:ENSSTUG00000012383
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115164260 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 27 NC_042983.1 (8764709..8769931, complement)

Chromosome 27 - NC_042983.1Genomic Context describing neighboring genes Neighboring gene leukocyte surface antigen CD53-like Neighboring gene leukocyte surface antigen CD53-like Neighboring gene T-box transcription factor TBX3-like Neighboring gene TM2 domain-containing protein 2-like Neighboring gene HtrA serine peptidase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042983.1 Chromosome 27 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042983.1 Reference fSalTru1.1 Primary Assembly

    Range
    8764709..8769931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029716551.1 → XP_029572411.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A673Y2D9
    Related
    ENSSTUP00000028648.1, ENSSTUT00000029978.1
    Conserved Domains (1) summary
    cl14058
    Location:57 → 303
    lectin_L-type; legume lectins

  2. XM_029716550.1 → XP_029572410.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A673Y286
    Related
    ENSSTUP00000028631.1, ENSSTUT00000029961.1
    Conserved Domains (1) summary
    cl14058
    Location:57 → 311
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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