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LOC115164103 interleukin-1 beta [ Salmo trutta (river trout) ]

Gene ID: 115164103, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115164103
Gene description
interleukin-1 beta
See related
Ensembl:ENSSTUG00000010352
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
IL-1B-1
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Genomic context

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See LOC115164103 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
6
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 27 NC_042983.1 (1432073..1435301)

Chromosome 27 - NC_042983.1Genomic Context describing neighboring genes Neighboring gene tight junction protein ZO-2-like Neighboring gene metal transporter CNNM4-like Neighboring gene uncharacterized LOC115164104 Neighboring gene uncharacterized LOC115165159

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042983.1 Chromosome 27 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to lipopolysaccharide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interleukin-1 beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042983.1 Reference fSalTru1.1 Primary Assembly

    Range
    1432073..1435301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029716234.1 → XP_029572094.1  interleukin-1 beta

    UniProtKB/TrEMBL
    A0A673XQL9
    Related
    ENSSTUP00000023693.1, ENSSTUT00000024854.1
    Conserved Domains (1) summary
    cl00094
    Location:105 → 257
    IL1; Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Nucleotide Protein
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