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LOC115163534 kin of IRRE-like protein 3 [ Salmo trutta (river trout) ]

Gene ID: 115163534, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115163534
Gene description
kin of IRRE-like protein 3
See related
Ensembl:ENSSTUG00000047210
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115163534 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
16
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 26 NC_042982.1 (25692162..25918711, complement)

Chromosome 26 - NC_042982.1Genomic Context describing neighboring genes Neighboring gene homeobox protein BarH-like 2 Neighboring gene RNA binding motif protein 7 Neighboring gene uncharacterized LOC115163976 Neighboring gene somatolactin alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042982.1 Chromosome 26 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042982.1 Reference fSalTru1.1 Primary Assembly

    Range
    25692162..25918711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029715516.1 → XP_029571376.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A674BQ90, A0A674EGZ0
    Related
    ENSSTUP00000107275.1, ENSSTUT00000114937.1

  2. XM_029715515.1 → XP_029571375.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A674BQ90

  3. XM_029715514.1 → XP_029571374.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A674EG79
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain

  4. XM_029715517.1 → XP_029571377.1  kin of IRRE-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A674EG79
    Related
    ENSSTUP00000107413.1, ENSSTUT00000115078.1

  5. XM_029715513.1 → XP_029571373.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A674EG79
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain
Nucleotide Protein
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